ForBio course: DNA barcoding - from sequences to species [Online]
ForBio course: DNA barcoding - from sequences to species
ForBio invites applicants to the course DNA-barcoding - from sequences to species. This course will be delivered ONLINE September 21 to September 25, 2020: 30 hours of online live lessons and recorded classes, as well as assignments for a written home exam (essay format). A good internet connection is required to follow the course.
DNA barcoding has found multiple uses in biodiversity science and management, as well as in authentication and bioinformatics. This five-day intensive course on molecular identification will give a basic introduction to the theory and best practice of DNA barcoding in biodiversity science and management. Various topics will be presented by recognized experts in the field, and students will actively contribute to their own learning through hands-on exercises and seminars. The following topics will be covered:
- Theory. What is DNA barcoding? Which genetic markers are used and why? How does DNA barcoding perform for various taxonomic groups? What are the possibilities and challenges associated with the method? What are the goals of international and national initiatives?
- Species identification and delimitation with DNA. Which methods can be used to differentiate species by molecular data? Do different methods and different markers provide conflicting results?
- Characteristics of reference databases. Emphasis on BOLD and UNITE as barcode reference depositories. How to retrieve and analyze data and how to use the available tools in these databases. Creating and retrieving datasets for analysis with other software (e.g. MEGA, PTP, ABGD, GMYC).
- What are the major uses of DNA barcode data in biodiversity science and management? Phylogenetics, phylogeography, taxonomy, biomonitoring.
- Opportunities and challenges with DNA barcoding of plants.
- Quality assurance and quality control of barcode reference libraries. Which possibilities exist, and how can you deal with errors?
- How to use DNA barcodes in integrative taxonomy? What is it, what are the benefits? Is it ok to describe new species on DNA sequence data alone?
- Challenges for international genetic projects in the light of international agreements on access and benefit sharing of genetic resources (e.g. the Nagoya Protocol).
- The future of DNA barcoding in biodiversity research, including possibilities with advanced sequencing technologies.
Students will receive theoretical and practical background to understand, perform and critically evaluate the use of DNA barcodes and DNA barcoding in biodiversity research.
They will understand both possibilities and limitations of the method and receive hands-on experience on how to handle biodiversity data available through open access databases.
Basic knowledge in biodiversity science with at least a bachelor’s degree in biology. Some experience with work on molecular data and the use of molecular systematics software is an advantage. Students are expected to read a selection of scientific review papers in advance and familiarize themselves with the BOLD and UNITE databases.
Torbjørn Ekrem - Professor, NTNU University Museum, Trondheim, Norway
Mika Bendiksby - Associate professor, NTNU University Museum, Trondheim, Norway
Rakel Blaalid - Researcher, NINA, Bergen, Norway
Filipe Costa - Associate professor, University of Minho, Braga, Portugal
Pete Hollingsworth - Professor, The Royal Botanic Garden Edinburgh, UK
Maximum number of participants: 20 students, in case of more applicants, participants will be selected based on the scientific, educational and/or professional merit, motivation and usefulness of the course for the applicants, with priority given ForBio members. Results of the selection process will be announced via e-mail shortly after the application deadline.
Target group: PhD students, master students, postdocs, researchers, consultants, government officials with relevant background in biology.
Working language: English
Assignement and credits: The course is equivalent to 3 ECTS. A written home exam (essay format) will follow the lessons. ForBio will provide certificates for those who successfully pass the exam.
Registration: Please fill in the online application form here. There is no course fee for ForBio members or associates.
Find out about how to become a ForBio member/associate here.
Application deadline: August 1st, 2020
Contact: Elisabeth Stur, ForBio, for more information.